LATEST GST CASE LAWS – 05.06.2026 – A2Z TAXCORP LLP

LATEST GST CASE LAWS: 05.06.2026

🔥📛 Madras HC invalidates pre-adjudication recovery letters issued directly to customers; Rejects cross-examination challenge in ITC-dispute

➡️ The Madras High Court held that GST authorities cannot initiate recovery from an assessee’s customers before the tax liability is finally adjudicated. Communications directing customers to remit amounts directly to the Government, when no demand had yet crystallised, were held to be legally unsustainable.

➡️ The Court reaffirmed that recovery mechanisms under Sections 79 and 83 of the CGST Act cannot be invoked at the proposal or investigation stage. Since the alleged tax dues had not been determined through adjudication when the impugned letters were issued, such communications were declared invalid and incapable of enforcement.

➡️ While quashing the pre-adjudication recovery communications, the Court clarified that the Revenue is not barred from recovering dues after determination of liability. Once valid adjudication orders are passed, the authorities may proceed with recovery strictly in accordance with Section 79 of the GST law.

➡️ In the challenge to adjudication orders involving alleged fraudulent availment of input tax credit, the assessee argued that reliance on statements of a key witness without permitting cross-examination violated principles of natural justice. The Court, however, held that the right to cross-examination is not absolute and must be assessed in the context of the facts and nature of the dispute.

➡️ The Court observed that in ITC fraud cases, the assessee can establish the genuineness of transactions through independent documentary evidence showing actual receipt of goods or services. Accordingly, denial of cross-examination alone did not invalidate the adjudication orders, and the assessee was relegated to the statutory appellate remedy, with liberty to file appeals within 30 days subject to the prescribed pre-deposit requirements.

✔️ Madras HC – NOORDEEN ENTERPRISES VS ADDITIONAL DIRECTOR GENERAL AND ANOTHER [W.P. Nos. 20547, 20549 & 20552 of 2023]

🔥📛 AAAR: Conversion fee of wetland to dry land constitutes consideration for supply; Taxable under reverse charge

➡️ The Kerala AAAR upheld the AAR ruling that the fee paid for conversion of wetland into dry land constitutes consideration for a taxable supply provided by the State Government and is therefore liable to GST under the reverse charge mechanism in terms of Notification No. 13/2017-Central Tax (Rate).

➡️ The AAAR held that the exemption under Notification No. 14/2017-Central Tax (Rate) is not available because the activity of land conversion is not a function entrusted to local authorities under Article 243G of the Constitution or the Eleventh Schedule, and therefore does not qualify for the exemption applicable to such functions.

➡️ Distinguishing “land conversion” from “land improvement,” the AAAR clarified that land improvement refers to activities that enhance the quality, productivity, or usability of existing land, particularly for agricultural purposes, whereas land conversion involves a change in the legal classification or permitted use of land for purposes such as residential, industrial, or commercial development.

➡️ The AAAR affirmed that the advance ruling application itself was not maintainable because it related to a transaction that had already been completed. It emphasized that the advance ruling mechanism is intended only for proposed or ongoing supplies and cannot be used to determine GST liability for concluded transactions after the event.

➡️ Stressing the prospective and preventive nature of the advance ruling framework under Sections 95(a) and 97 of the CGST Act, the AAAR observed that taxpayers cannot seek to regularize past transactions through advance rulings. Since the appellant had already paid the conversion fee and obtained the conversion order before filing the application, the matter was a concluded transaction and liable to be rejected as non-admissible at the threshold.

✔️ Kerala AAAR – In the matter of Manappuram Finance Ltd [ORDER No. AAAR/01/2025]

🔥📛 HC: Tax-liability on NHAI annuity involves factual determination, not pure question-of-law; Declines interference against Rs 112-crores demand

➡️ The Meghalaya High Court dismissed the writ petition filed by M/s Jorabat Shillong Expressway Ltd. against a GST demand of about ₹112.39 crore on annuity receipts from NHAI, holding that an effective statutory appellate remedy was available under Section 107 of the CGST Act. However, considering that the assessee had pursued the writ proceedings bona fide, the Court granted liberty to file an appeal within four weeks, directing the appellate authority to decide the matter independently and without being influenced by the High Court’s observations.

➡️ The assessee contended that annuity payments received under the BOT Annuity Model were exempt from GST under Entry 23A of the relevant exemption notification and also challenged the validity of the GST Council’s recommendation and the subsequent circular clarifying that such annuity payments for road construction were not covered by the exemption. The Court noted that these contentions primarily concerned the interpretation and applicability of statutory provisions and notifications.

➡️ The Court held that a dispute regarding the interpretation of exemption notifications, circulars, or the extent of powers exercised under them does not, by itself, amount to a jurisdictional defect justifying interference under Article 226. It emphasized that merely framing a challenge in constitutional terms cannot make a writ petition maintainable when the real controversy relates to tax assessment, classification, or exemption issues arising under the GST law.

➡️ The High Court observed that the controversy involved examination of the concession agreement, contractual obligations, nature of services supplied, determination of principal supply, applicability of exemption notifications, and related factual and legal issues. Such matters require detailed adjudication and cannot be treated as pure questions of law suitable for determination in writ jurisdiction at the first instance.

➡️ Reiterating the settled principle that tax statutes provide a complete mechanism of appeal and revision, the Court held that the existence of binding circulars does not render the appellate remedy ineffective. Finding no violation of natural justice and no lack of jurisdiction in the proceedings, the Court concluded that the issues raised were appropriately examinable by the GST appellate authority and therefore dismissed the writ petition on the ground of availability of an alternative statutory remedy.

✔️ Meghalaya HC – Jorabat Shillong Expressway Limited vs Union of India & Ors [WP(C) No. 245 of 2024]

🔥📛 HC: 30-day notice in FORM GST REG-31 mandatory before registration cancellation for bank detail default

➡️ The Gauhati High Court set aside the show cause notice and cancellation order that revoked the assessee’s GST registration for alleged non-compliance with Rule 10A of the CGST Rules, holding that the department failed to follow the mandatory statutory procedure and denied the assessee a fair opportunity to respond.

➡️ The Revenue had alleged that the assessee did not furnish bank account details on the GST portal as required under Rule 10A read with Rule 21(d), and on that basis cancelled a GST registration that had originally been granted on 20 September 2017, with cancellation made effective from 9 June 2025.

➡️ The Court clarified that while Rule 10A mandates furnishing bank account details and Rule 21A(2A)(b) permits suspension of registration for violation of Rule 10A, the law first requires issuance of a show cause notice in Form GST REG-31 and grant of a 30-day period to explain why the registration should not be cancelled.

➡️ The Court emphasized that the department incorrectly issued a notice in Form GST REG-17 and allowed only seven days for reply under Rule 22(1). Since Rule 21A(2A)(b) prescribes a specific mechanism for cases involving violation of Rule 10A, the authorities cannot bypass that procedure and invoke a different provision carrying a shorter response period.

➡️ Holding that the proper officer violated both the statutory mandate and principles of natural justice by not issuing Form GST REG-31 and not granting the prescribed 30 days, the Court directed restoration of the GST registration. However, it clarified that such restoration would not affect the assessee’s liability to pay taxes, clear dues, or comply with obligations under the CGST Act and Rules.

✔️ Gauhati HC – Huma Power & Tower Pvt. Ltd. vs State of Assam [Writ petition (C) NO. 2147/2026]

🔥📛 HC: Assessment proceedings may have bearing on criminal prosecution where no tax violation is found; Grants conditional bail

➡️ The Allahabad High Court granted bail to an accused alleged to have orchestrated fake firms and wrongful availment/passing of Input Tax Credit (ITC) of about ₹45.84 crore under Section 132 of the CGST Act, holding that assessment proceedings and criminal prosecution are independent, but findings under Sections 73/74 may materially impact the prosecution if it is ultimately determined that no tax violation occurred.

➡️ The Court noted that the prosecution case is primarily based on documentary and electronic evidence already in the Revenue’s possession, including GST portal records, WhatsApp communications, IP address data, bank transactions and statements of related proprietors. Since the investigation was complete and the evidence was largely secured, continued custody was not considered necessary for the purposes of investigation.

➡️ While the Revenue alleged that the accused controlled multiple fake entities through common business premises, common IP addresses, interconnected banking transactions and bill trading without actual movement of goods, the Court observed that these allegations are matters for trial and do not by themselves justify prolonged pre-trial detention, particularly when the accused has no criminal antecedents.

➡️ Relying on Supreme Court precedents including Sanjay Chandra, Ratnambar Kaushik, Vineet Jain, Atul Mehra and Manish Sisodia, the Court reaffirmed that personal liberty under Article 21, the presumption of innocence before conviction and the principle that “bail is the rule and jail is the exception” remain equally applicable in GST prosecutions. It emphasized that pre-trial detention is intended only to secure the accused’s presence during trial and cannot be used as a punitive measure.

➡️ Stressing the constitutional right to speedy justice, the Court held that timely disposal of cases forms part of human rights and access to justice. Considering that the offences are triable by a Magistrate, carry a maximum punishment of five years, and no exceptional circumstances existed to deny relief, the Court granted bail subject to conditions regarding cooperation with proceedings, non-tampering of evidence, travel restrictions and compliance with bail terms, with liberty to seek cancellation in case of breach.

✔️ Allahabad HC – Shakib Qureshi Vs Anti Evasion CGST & Ors [CRIMINAL MISC. BAIL APPLICATION No. – 44278 of 2025]

🔥📛 HC: FY 2018-19 import ITC cannot be denied on GSTR-2A/3B mismatch as import/SEZ-data excluded from GSTR-2A

➡️ The Karnataka High Court quashed the GST demand of ₹20.01 crore raised against Biocon Ltd. for alleged excess ITC availment based on a mismatch between GSTR-3B and GSTR-2A, holding that the demand was fundamentally flawed because GSTR-2A for FY 2018-19 did not capture import transactions, import of services, or SEZ procurements, making any comparison with GSTR-3B incomplete and legally unsustainable.

➡️ The Court accepted that the mismatch arose due to an incorrect disclosure of ITC relating to imports and SEZ procurements in September 2018 under the wrong table of GSTR-3B, which was later corrected in GSTR-9. It held that a genuine reporting error or an inadvertent reference to the wrong month in the assessee’s reply could not justify denial of otherwise eligible ITC when the underlying transactions and corrections were duly disclosed.

➡️ Relying on Rule 36(1)(d) of the CGST/KGST Rules, the Court emphasized that a Bill of Entry is the prescribed document for availing ITC on imported goods. For the period prior to insertion of Section 16(2)(aa) from 1 January 2022, GST law did not require matching of import-related credits with GSTR-2A, and therefore ITC could not be denied merely because such credits were absent from the auto-generated statement.

➡️ The Court noted that GSTR-2A was originally designed to reflect only supplies reported by domestic suppliers and did not include imports, import of services, reverse charge transactions, or SEZ procurements during the relevant period. Since the assessee had properly reported reverse charge liabilities and corresponding credits in GSTR-3B and subsequently in GSTR-9, the absence of such details in GSTR-2A due to system limitations could not be used as a basis for raising tax demands.

➡️ Referring to GSTN advisories and Government clarifications issued in 2020 and 2021, the Court observed that import and SEZ-related details started appearing in GSTR-2A only after system integration with ICEGATE and that no statutory reconciliation requirement existed before Section 16(2)(aa). While quashing the ITC mismatch demand, the Court also expressed prima facie disagreement with other audit-based demand confirmations but remanded those issues to the adjudicating authority for fresh consideration in light of applicable law, circulars, notifications, judicial precedents, and the assessee’s submissions.

✔️ Karnataka HC – Biocon Limited v. State of Karnataka [WRIT PETITION NO. 11918 OF 2024 (T-RES)]

This will close in 5 seconds

Scroll to Top